Work
Research papers, products, and open-source projects.
- Spontaneous immortalization of bovine fibroblasts following long-term expansion offers a non-transformed cell source for cultivated beef Pasitka, Cohen, Regenbaum, Ehrlich, Gildor, Gold, Nahmias
- Electro-metabolic coupling in multi-chambered vascularized human cardiac organoids Ghosheh, Ehrlich, Ioannidis, Ayyash, Goldfracht, Cohen, Fischer, Mintz, Gepstein, Nahmias
- Mechanism and reversal of drug-induced nephrotoxicity on a chip Cohen, Ioannidis, Ehrlich, Regenbaum, Cohen, Ayyash, Shafran Tikva, Nahmias
- 402 Bioinformatics pipelines for researchers who don't have time to learn the stack. Curated Nextflow workflows on HPC — free for academic use. Acquired.
- talmud.dev Talmud study app. The full daf — main text, Rashi, Tosafot — wrapped in context notes anchored to the passage they explain: sugya structure, rabbi biographies, cross-references to cited dapim, and halachic follow-through. Deterministic rules place what they can; a model handles the rest, and human corrections always win.
- tanach.dev Mikraot gedolot reader. The biblical text laid out with its classical commentaries, plus generated geography, timelines, and narrative overviews for each chapter.
- shabbat Shabbat hosting tracker — guest lists, hosting history, and reciprocity suggestions. The web app is archived; its MCP tools remain available.
- nf-core/rnaseq RNA-seq analysis pipeline — STAR, RSEM, HISAT2, Salmon with gene/isoform counts and QC.
- nf-core/methylseq Bisulfite-sequencing methylation pipeline — Bismark/bwa-meth + MethylDackel or bwa-mem + rastair.
- nf-core/rnavar GATK4 RNA variant-calling pipeline.
- hu-glioblastoma Robotic generation and kinetic screening of patient-derived glioblastoma organoids. Codebase for an upcoming paper.
- daf-renderer DOM render library for laying out Talmud pages (tzurat hadaf) on the web.
- talmud Early GPT-3 experiment with source-referencing over Sefaria — predecessor to TorahGPT.
- chessdeck Deck-building chess. Draft an army against a points budget, then spend each turn on exactly one thing — deploy a card, draw, or move. Win by checkmate. Two-player online or against the AI.
- israeli-phone-agent AI agent demo that handles phone calls in Hebrew.
- OneUSGAutomaticClock Auto time-tracking script for Georgia Tech students — clocks hours without forgetting to stop.