Work

Pasitka, Cohen, Regenbaum, Ehrlich, Gildor, Gold, Nahmias

Cohen, Ioannidis, Ehrlich, Regenbaum, Cohen, Ayyash, Shafran Tikva, Nahmias

Bioinformatics pipelines for researchers who don't have time to learn the stack. Curated Nextflow workflows on HPC — free for academic use. Acquired.

RNA-seq analysis pipeline — STAR, RSEM, HISAT2, Salmon with gene/isoform counts and QC.

Bisulfite-sequencing methylation pipeline — Bismark/bwa-meth + MethylDackel or bwa-mem + rastair.

GATK4 RNA variant-calling pipeline.

Robotic generation and kinetic screening of patient-derived glioblastoma organoids. Codebase for an upcoming paper.

DOM render library for laying out Talmud pages (tzurat hadaf) on the web.

Early GPT-3 experiment with source-referencing over Sefaria — predecessor to TorahGPT.

AI agent demo that handles phone calls in Hebrew.

Auto time-tracking script for Georgia Tech students — clocks hours without forgetting to stop.